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STRINGSTRING
PP1S124_28V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S124_28V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S124_28V6.1Predicted protein (642 aa)    
Predicted Functional Partners:
PP1S267_72V6.1
Predicted protein (720 aa)
     
   
  0.999
PP1S18_41V6.3
Predicted protein (564 aa)
         
  0.932
PP1S4_383V6.1
Predicted protein (823 aa)
   
 
  0.794
PP1S114_86V6.1
Predicted protein (741 aa)
   
   
  0.710
PP1S5_169V6.1
Predicted protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin- like GTPase superfamily. TrmE GTPase family (615 aa)
   
 
  0.700
PP1S369_5V6.1
GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis (572 aa)
   
 
  0.700
PP1S123_84V6.1
GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis (654 aa)
   
 
  0.700
PP1S75_49V6.1
Predicted protein (388 aa)
   
   
  0.667
PP1S9_39V6.3
annotation not available (694 aa)
   
   
  0.652
PP1S11819_1V6.1
annotation not available (315 aa)
   
   
  0.652
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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