STRINGSTRING
PP1S125_64V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S125_64V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S125_64V6.1Predicted protein (867 aa)    
Predicted Functional Partners:
PP1S336_24V6.1
Sm-like protein LSM2; Component of LSM protein complexes, which are involved in RNA processing (93 aa)
     
 
  0.994
PP1S154_125V6.1
Predicted protein (98 aa)
     
 
  0.994
PP1S16_329V6.1
annotation not available (97 aa)
     
 
  0.984
PP1S154_55V6.1
Predicted protein (540 aa)
     
 
  0.977
PP1S28_157V6.1
Uncharacterized protein (86 aa)
     
 
  0.957
PP1S36_327V6.1
Predicted protein (159 aa)
     
 
  0.950
PP1S28_210V6.1
Uncharacterized protein (146 aa)
     
 
  0.950
PP1S17_388V6.1
Predicted protein (91 aa)
     
 
  0.930
PP1S162_163V6.1
Predicted protein (91 aa)
     
 
  0.930
PP1S35_343V6.1
Predicted protein (102 aa)
     
 
  0.925
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
Server load: low (7%) [HD]