• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
PP1S126_52V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S126_52V6.1" - 60S ribosomal protein L13 in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S126_52V6.160S ribosomal protein L13 ; Belongs to the eukaryotic ribosomal protein eL13 family (207 aa)    
Predicted Functional Partners:
3989066
Predicted protein; Belongs to the universal ribosomal protein uL16 family (561 aa)
     
 
  0.991
PP1S316_6V6.1
Predicted protein; Belongs to the universal ribosomal protein uS11 family (151 aa)
     
 
  0.991
PP1S271_98V6.1
Predicted protein; Belongs to the universal ribosomal protein uS11 family (151 aa)
     
 
  0.991
PP1S79_253V6.3
60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family (63 aa)
     
 
  0.990
PP1S58_102V6.1
60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family (63 aa)
     
 
  0.990
PP1S28_307V6.1
60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family (63 aa)
     
 
  0.990
PP1S59_122V6.1
60S ribosomal protein L6 ; Belongs to the eukaryotic ribosomal protein eL6 family (228 aa)
     
 
  0.990
PP1S30_44V6.1
60S ribosomal protein L6 ; Belongs to the eukaryotic ribosomal protein eL6 family (231 aa)
     
 
  0.990
PP1S126_115V6.2
60S ribosomal protein L6 ; Belongs to the eukaryotic ribosomal protein eL6 family (231 aa)
     
 
  0.990
PP1S126_112V6.2
60S ribosomal protein L6 ; Belongs to the eukaryotic ribosomal protein eL6 family (231 aa)
     
 
  0.990
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
Server load: low (13%) [HD]