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ubq1 protein (Physcomitrella patens) - STRING interaction network
"ubq1" - Putative polyubiquitin in Physcomitrella patens
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ubq1Putative polyubiquitin (153 aa)    
Predicted Functional Partners:
3989066
Predicted protein; Belongs to the universal ribosomal protein uL16 family (561 aa)
     
 
  0.930
Mcb1
Multiubiquitin chain-binding protein (414 aa)
     
 
  0.921
PP1S37_31V6.1
Predicted protein (768 aa)
     
 
  0.916
PP1S140_31V6.1
Ubiquitin carboxyl-terminal hydrolase (234 aa)
     
 
  0.914
PP1S84_287V6.6
NEDD8-activating enzyme E1 regulatory subunit; Regulatory subunit of the dimeric E1 enzyme. E1 activates RUB1/NEDD8 by first adenylating its C-terminal glycine residue with ATP, thereafter linking this residue to the side chain of the catalytic cysteine, yielding a RUB1-ECR1 thioester and free AMP. E1 finally transfers RUB1 to the catalytic cysteine of RCE1 (529 aa)
     
 
  0.888
PP1S79_267V6.1
NEDD8-activating enzyme E1 regulatory subunit; Regulatory subunit of the dimeric E1 enzyme. E1 activates RUB1/NEDD8 by first adenylating its C-terminal glycine residue with ATP, thereafter linking this residue to the side chain of the catalytic cysteine, yielding a RUB1-ECR1 thioester and free AMP. E1 finally transfers RUB1 to the catalytic cysteine of RCE1 (520 aa)
     
 
  0.888
PP1S72_227V6.1
Predicted protein (3779 aa)
     
 
  0.885
PP1S53_78V6.1
annotation not available (3804 aa)
     
 
  0.885
PP1S495_6V6.1
Ubiquitinyl hydrolase 1; Ubiquitin carboxyl-terminal hydrolase (817 aa)
     
 
  0.885
PP1S373_40V6.1
Predicted protein (284 aa)
     
 
  0.885
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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