STRINGSTRING
PP1S129_152V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S129_152V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S129_152V6.1Predicted protein (269 aa)    
Predicted Functional Partners:
PP1S169_50V6.1
Predicted protein (480 aa)
   
  0.997
PP1S358_20V6.1
Predicted protein (491 aa)
   
  0.986
PP1S66_139V6.1
Predicted protein (640 aa)
   
  0.982
PP1S450_27V6.1
Annotation not available (66 aa)
   
  0.982
PP1S107_189V6.1
Predicted protein (811 aa)
   
0.976
PP1S43_166V6.1
Predicted protein (798 aa)
   
  0.975
PP1S57_70V6.1
Predicted protein (671 aa)
   
  0.973
PP1S4_245V6.1
Annotation not available (513 aa)
   
  0.973
PP1S46_159V6.1
Predicted protein (671 aa)
   
  0.973
PP1S373_41V6.1
Predicted protein (184 aa)
   
  0.973
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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