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Pb protein (Physcomitrella patens) - STRING interaction network
"Pb" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PbPredicted protein (119 aa)    
Predicted Functional Partners:
PSBS
Photosystem II 22kDa chloroplast protein (280 aa)
     
   
  0.572
PP1S455_8V6.1
Predicted protein (372 aa)
     
   
  0.553
PP1S221_76V6.1
Predicted protein (490 aa)
     
   
  0.553
PP1S101_95V6.1
PsbY photosystem II polypeptide (368 aa)
     
   
  0.553
Sep4b
Predicted protein (385 aa)
     
   
  0.523
Sep4c
Predicted protein (304 aa)
     
   
  0.523
Sep4a
Predicted protein (304 aa)
     
   
  0.523
p1
Predicted protein (158 aa)
     
   
  0.519
PP1S215_109V6.2
Predicted protein (378 aa)
     
   
  0.510
PP1S71_89V6.1
Predicted protein (143 aa)
     
        0.489
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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