STRINGSTRING
PP1S12_401V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S12_401V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S12_401V6.1Predicted protein (280 aa)    
Predicted Functional Partners:
PP1S21_105V6.1
Predicted protein (300 aa)
     
   
  0.540
PP1S152_86V6.1
Predicted protein (247 aa)
     
   
  0.487
PP1S152_82V6.1
Predicted protein (250 aa)
     
   
  0.487
PP1S2_451V6.1
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems (280 aa)
           
  0.483
PP1S22_320V6.1
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems (252 aa)
           
  0.483
Mdhar1
Predicted protein (434 aa)
           
  0.477
Mdhar3
Predicted protein (434 aa)
           
  0.477
Mdhar2
Predicted protein (433 aa)
           
  0.477
PP1S98_114V6.1
Annotation not available (74 aa)
           
  0.418
PP1S174_60V6.1
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems (227 aa)
           
  0.418
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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