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PP1S12_40V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S12_40V6.1" - 3-isopropylmalate dehydrogenase in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S12_40V6.13-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate (426 aa)    
Predicted Functional Partners:
PP1S21_393V6.1
Predicted protein (276 aa)
 
  0.999
PP1S34_50V6.1
Predicted protein (273 aa)
 
  0.999
PP1S227_66V6.1
Predicted protein (518 aa)
 
  0.999
PP1S370_61V6.1
Threonine dehydratase (670 aa)
 
 
  0.994
PP1S40_15V6.2
Acetolactate synthase (721 aa)
 
  0.978
PP1S32_312V6.1
Acetolactate synthase (721 aa)
 
  0.978
PP1S162_10V6.1
Predicted protein (492 aa)
 
 
  0.976
PP1S182_18V6.1
Predicted protein; Belongs to the TPP enzyme family (619 aa)
   
  0.965
PP1S386_21V6.1
Predicted protein (1428 aa)
   
   
  0.917
PP1S11531_1V6.1
Predicted protein (300 aa)
   
   
  0.917
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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