STRINGSTRING
PP1S130_196V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S130_196V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S130_196V6.1Predicted protein (332 aa)    
Predicted Functional Partners:
PP1S60_107V6.1
Predicted protein (665 aa)
              0.785
PP1S43_232V6.1
Imidazole glycerol phosphate synthase subunit hisF (617 aa)
              0.763
PP1S75_49V6.1
Predicted protein (388 aa)
 
        0.666
PP1S399_34V6.1
Predicted protein (421 aa)
   
   
  0.613
PP1S98_142V6.1
Predicted protein (386 aa)
   
   
  0.567
PP1S92_8V6.1
Predicted protein (334 aa)
   
   
  0.564
PP1S290_35V6.1
Predicted protein (651 aa)
   
   
  0.564
PP1S268_3V6.1
Predicted protein; Removes the formyl group from the N-terminal Met of newly synthesized proteins (304 aa)
   
   
  0.563
PP1S7_296V6.1
Annotation not available (568 aa)
   
      0.560
PpSig2
Plastid sigma facor SIG2 (579 aa)
   
      0.560
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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