STRINGSTRING
PP1S130_227V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S130_227V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S130_227V6.1Predicted protein (485 aa)    
Predicted Functional Partners:
PP1S3_324V6.1
Predicted protein (497 aa)
 
   
  0.985
PP1S77_205V6.1
Annotation not available (401 aa)
 
   
  0.985
PP1S31_108V6.2
Predicted protein (415 aa)
 
   
  0.984
PP1S31_53V6.1
Predicted protein (370 aa)
 
 
  0.981
PP1S47_21V6.1
Predicted protein (358 aa)
         
  0.952
PP1S9_51V6.2
Annotation not available (477 aa)
   
   
 
0.803
PP1S60_199V6.2
Predicted protein (491 aa)
       
  0.671
PP1S505_6V6.1
Predicted protein (345 aa)
       
  0.671
PP1S505_2V6.1
Annotation not available (139 aa)
       
  0.671
PP1S205_27V6.1
Predicted protein (368 aa)
       
  0.671
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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