STRINGSTRING
PP1S130_271V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S130_271V6.1" - Annotation not available in Physcomitrella patens
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S130_271V6.1Annotation not available (151 aa)    
Predicted Functional Partners:
PP1S178_134V6.1
Dynein light chain TCTEX1 (106 aa)
     
 
  0.827
PP1S335_29V6.1
Predicted protein (99 aa)
     
 
  0.541
PP1S187_22V6.1
Predicted protein (99 aa)
     
 
  0.541
PP1S6_275V6.1
Predicted protein (112 aa)
     
 
  0.523
PP1S61_117V6.1
Predicted protein (116 aa)
     
 
  0.523
PP1S52_104V6.1
Predicted protein (112 aa)
     
 
  0.523
PP1S42_115V6.1
Predicted protein (3274 aa)
     
 
  0.453
PP1S233_14V6.1
Inner dynein arm light chain (245 aa)
     
   
  0.448
PP1S4_436V6.2
Inner dynein arm I1 intermediate chain IC138 (350 aa)
     
   
  0.423
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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