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STRINGSTRING
PP1S132_26V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S132_26V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S132_26V6.1Predicted protein (622 aa)    
Predicted Functional Partners:
PP1S369_27V6.1
Predicted protein (560 aa)
     
   
  0.647
PP1S210_98V6.1
Predicted protein (605 aa)
   
   
  0.618
PP1S166_41V6.1
Predicted protein (578 aa)
   
   
  0.618
PP1S169_74V6.1
Predicted protein (323 aa)
           
  0.600
PP1S59_311V6.1
Uncharacterized protein (393 aa)
           
  0.598
PP1S277_23V6.1
Predicted protein (392 aa)
           
  0.598
PP1S91_16V6.1
Predicted protein (685 aa)
     
   
  0.590
PP1S219_79V6.1
annotation not available (728 aa)
     
   
  0.590
PP1S277_10V6.3
Zeta-carotene desaturase; Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7’ (588 aa)
     
   
  0.582
PP1S211_145V6.1
Zeta-carotene desaturase; Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7’ (593 aa)
     
   
  0.582
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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