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STRINGSTRING
PP1S133_18V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S133_18V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S133_18V6.1Predicted protein (114 aa)    
Predicted Functional Partners:
PP1S26_197V6.1
annotation not available (276 aa)
           
  0.575
PP1S25_296V6.3
annotation not available (296 aa)
           
  0.575
PP1S6_193V6.1
Predicted protein (210 aa)
           
  0.550
PP1S155_53V6.1
Predicted protein (568 aa)
           
  0.509
PP1S72_180V6.2
annotation not available (179 aa)
           
  0.506
PP1S53_227V6.1
Ubiquitin thioesterase (301 aa)
           
  0.506
PP1S199_89V6.1
annotation not available (1133 aa)
           
  0.467
PP1S211_21V6.1
Predicted protein; Belongs to the ubiquitin-conjugating enzyme family (256 aa)
       
 
  0.416
PP1S193_49V6.1
annotation not available (162 aa)
       
 
  0.416
PP1S495_6V6.1
Ubiquitinyl hydrolase 1; Ubiquitin carboxyl-terminal hydrolase (817 aa)
       
 
  0.415
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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