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  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
PP1S134_58V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S134_58V6.1" - annotation not available in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S134_58V6.1annotation not available (1211 aa)    
Predicted Functional Partners:
PP1S88_186V6.1
Predicted protein (1189 aa)
     
 
  0.619
PP1S81_123V6.1
Predicted protein (1194 aa)
     
 
  0.619
ppabcb22
annotation not available (562 aa)
       
 
  0.541
PP1S249_36V6.2
Predicted protein (273 aa)
           
  0.533
PP1S70_132V6.1
Predicted protein (571 aa)
           
  0.532
PP1S3_199V6.1
annotation not available (612 aa)
           
  0.532
Arl3
Arl3-family small GTPase ; Belongs to the small GTPase superfamily. Arf family (187 aa)
           
  0.528
ALDH7A
Antiquitin ; Belongs to the aldehyde dehydrogenase family (511 aa)
           
  0.528
PP1S477_5V6.1
Predicted protein (483 aa)
     
   
  0.526
PP1S90_210V6.1
annotation not available (616 aa)
           
  0.520
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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