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STRINGSTRING
PP1S136_220V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S136_220V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S136_220V6.1Predicted protein (260 aa)    
Predicted Functional Partners:
PP1S347_32V6.2
Nuclear/nucleolar GTPase 2; GTPase involved in pre-60S ribosomal subunit maturation (650 aa)
     
 
  0.998
PP1S28_215V6.1
Uncharacterized protein (475 aa)
     
 
  0.998
PP1S47_85V6.1
Predicted protein (595 aa)
     
 
  0.997
PP1S53_169V6.1
Predicted protein (312 aa)
     
 
  0.996
PP1S37_98V6.1
Predicted protein (226 aa)
     
 
  0.996
PP1S104_30V6.1
60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly (186 aa)
     
 
  0.996
PP1S294_14V6.1
Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (434 aa)
     
 
  0.995
PP1S37_345V6.1
Predicted protein (451 aa)
     
 
  0.995
PP1S43_13V6.1
Predicted protein (169 aa)
     
 
  0.995
PP1S343_39V6.1
Predicted protein (169 aa)
     
 
  0.995
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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