STRINGSTRING
CHR1529 protein (Physcomitrella patens) - STRING interaction network
"CHR1529" - SNF2 family DNA-dependent ATPase in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHR1529SNF2 family DNA-dependent ATPase (1049 aa)    
Predicted Functional Partners:
PP1S281_85V6.1
Annotation not available (752 aa)
     
  0.974
NFE1501
ATP-dependent chromatin assembly factor (747 aa)
     
  0.974
PP1S206_25V6.1
Annotation not available (458 aa)
     
  0.972
NFC1501
Nucleosome remodeling factor, p48 subunit (422 aa)
     
  0.972
PP1S217_34V6.1
Predicted protein (161 aa)
     
  0.967
PP1S33_203V6.1
DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1397 aa)
   
  0.967
PP1S109_208V6.1
DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1464 aa)
   
  0.967
RUVBL1501
DNA helicase, TBP-interacting protein (456 aa)
     
  0.960
PP1S40_80V6.1
Annotation not available (146 aa)
     
  0.960
PP1S40_79V6.1
Annotation not available (126 aa)
     
  0.960
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
Server load: low (11%) [HD]