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STRINGSTRING
PP1S13_225V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S13_225V6.1" - Predicted protein in Physcomitrella patens
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S13_225V6.1Predicted protein (694 aa)    
Predicted Functional Partners:
PP1S264_72V6.1
Predicted protein (252 aa)
           
  0.532
PP1S73_94V6.1
Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family (634 aa)
     
   
  0.513
PP1S137_209V6.1
Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family (634 aa)
     
   
  0.513
SYP6A2
Qc-SNARE, SYP6/Tlg1p/Syntaxin 6 family (238 aa)
           
  0.509
SYP61A1
Qc-SNARE, SYP6/Tlg1p/Syntaxin 6 family (241 aa)
           
  0.509
PP1S83_118V6.1
V-type proton ATPase subunit G; Catalytic subunit of the peripheral V1 complex of vacuolar ATPase (V-ATPase). V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells (109 aa)
           
  0.479
PP1S24_173V6.1
V-type proton ATPase subunit G; Catalytic subunit of the peripheral V1 complex of vacuolar ATPase (V-ATPase). V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells (109 aa)
           
  0.479
PP1S20_254V6.1
Predicted protein (908 aa)
           
  0.471
PP1S41_16V6.1
Predicted protein (332 aa)
           
  0.465
PP1S117_187V6.1
Trafficking protein particle complex subunit; May play a role in vesicular transport from endoplasmic reticulum to Golgi (121 aa)
           
  0.465
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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