STRINGSTRING
PP1S13_309V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S13_309V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S13_309V6.1Predicted protein (409 aa)    
Predicted Functional Partners:
PP1S240_91V6.1
Predicted protein (348 aa)
   
 
      0.484
PP1S218_59V6.1
Predicted protein (349 aa)
   
 
      0.483
PP1S116_98V6.1
Predicted protein (348 aa)
   
 
      0.480
PP1S113_72V6.1
Predicted protein (348 aa)
   
 
      0.477
CIPK06
Predicted protein (450 aa)
   
 
      0.435
PP1S2_590V6.1
Predicted protein (302 aa)
   
          0.419
CIPK01
Predicted protein (444 aa)
   
 
      0.415
PP1S84_190V6.1
Predicted protein (324 aa)
   
          0.412
cpk19
Cpk19 calcium-dependent protein kinase (549 aa)
   
     
  0.411
PP1S35_121V6.1
Annotation not available (266 aa)
   
 
      0.410
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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