• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
PHY5c protein (Physcomitrella patens) - STRING interaction network
"PHY5c" - Phytochrome in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHY5cPhytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light- the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region (1124 aa)    
Predicted Functional Partners:
CRY1a
Blue light photoreceptor cryptochrome; Cryptochrome 1a (727 aa)
       
 
  0.916
PhotB1
PHOTB1 phototropin B1 blue light photoreceptor (1133 aa)
           
  0.899
PHOTB2
PHOTB2 phototropin B2 blue light photoreceptor (1171 aa)
           
  0.899
PhotA2
PHOTA2 phototropin A2 blue light photoreceptor (1095 aa)
           
  0.899
PHOTA1
PHOTA1 phototropin A1 blue light photoreceptor (1070 aa)
           
  0.899
PP1S87_156V6.1
annotation not available (307 aa)
       
 
  0.844
PP1S80_72V6.1
Predicted protein (299 aa)
       
 
  0.844
PP1S69_37V6.1
Predicted protein (728 aa)
       
  0.844
PP1S68_85V6.2
Predicted protein (702 aa)
       
  0.844
Cry1b
AtCRY1/HY4-like cryptochrome blue light photoreceptor protein (413 aa)
       
 
  0.796
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
Server load: low (14%) [HD]