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STRINGSTRING
HDA1508 protein (Physcomitrella patens) - STRING interaction network
"HDA1508" - Histone deacetylase complex, catalytic component HDA1 in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HDA1508Histone deacetylase complex, catalytic component HDA1 (374 aa)    
Predicted Functional Partners:
PP1S61_39V6.1
Predicted protein (2124 aa)
     
 
  0.938
ARID1506
ARID/BRIGHT DNA-binding domain-containing protein (982 aa)
       
 
  0.936
ARID1505
ARID/BRIGHT DNA-binding domain-containing protein (887 aa)
       
 
  0.936
PP1S325_74V6.1
annotation not available (1709 aa)
   
 
  0.913
PP1S100_44V6.1
annotation not available (1783 aa)
   
 
  0.913
PP1S3_173V6.1
annotation not available (425 aa)
   
 
  0.913
HDA1506
Histone deacetylase ; Belongs to the histone deacetylase family. HD Type 1 subfamily (431 aa)
   
 
0.882
HDA1504
Histone deacetylase ; Belongs to the histone deacetylase family. HD Type 1 subfamily (723 aa)
   
 
0.871
HDA1505
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily (774 aa)
   
 
0.871
PP1S251_77V6.1
Predicted protein; Component of the post-replicative DNA mismatch repair system (MMR) (951 aa)
   
      0.854
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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