• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
PP1S143_11V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S143_11V6.1" - Predicted protein in Physcomitrella patens
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S143_11V6.1Predicted protein (157 aa)    
Predicted Functional Partners:
PP1S36_86V6.1
annotation not available (768 aa)
     
 
  0.917
PP1S229_16V6.1
H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1 (213 aa)
     
      0.908
PP1S129_145V6.1
H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1 (206 aa)
     
      0.908
PRMT1502
Protein arginine N-methyltransferase ; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N- methyltransferase family (370 aa)
     
      0.896
PRMT1501
Protein arginine N-methyltransferase ; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N- methyltransferase family (385 aa)
     
      0.896
PRMT1507
annotation not available (267 aa)
     
      0.896
PP1S45_280V6.1
Predicted protein (155 aa)
   
   
0.853
PP1S127_123V6.2
Predicted protein; Belongs to the peptidase C19 family (583 aa)
     
 
  0.812
PP1S641_1V6.1
Predicted protein (807 aa)
     
 
  0.807
RS27
Arginine/serine-rich splicing factor RS27 transcript I (233 aa)
     
 
  0.792
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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