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ppabca3 protein (Physcomitrella patens) - STRING interaction network
"ppabca3" - ATP-binding cassette transporter, subfamily A, member 3, group ATH protein PpABCA3 in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ppabca3ATP-binding cassette transporter, subfamily A, member 3, group ATH protein PpABCA3 (812 aa)    
Predicted Functional Partners:
ppabcd5
ATP-binding cassette transporter, subfamily D, member 5, group PMP protein PpABCD5 (1383 aa)
     
   
  0.608
ppabcd6
ATP-binding cassette transporter, subfamily D, member 6, group PMP protein PpABCD6 (1342 aa)
     
   
  0.608
ppabcf1
ATP-binding cassette transporter, subfamily F, member 1 protein PpABCF1 (726 aa)
     
   
  0.558
PP1S191_78V6.1
annotation not available (575 aa)
     
   
  0.556
ppabcb22
annotation not available (562 aa)
   
   
  0.534
PP1S10556_1V6.1
annotation not available (272 aa)
     
   
  0.523
PP1S188_11V6.1
Predicted protein (328 aa)
           
  0.522
PP1S402_8V6.1
annotation not available (605 aa)
           
  0.519
PP1S233_94V6.1
annotation not available (605 aa)
           
  0.519
PP1S167_70V6.1
annotation not available (341 aa)
     
 
  0.518
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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