STRINGSTRING
PP1S144_127V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S144_127V6.1" - Palmitoyltransferase in Physcomitrella patens
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S144_127V6.1Palmitoyltransferase (264 aa)    
Predicted Functional Partners:
PP1S97_166V6.1
Predicted protein (267 aa)
           
  0.447
PP1S83_150V6.1
Predicted protein (241 aa)
           
  0.447
PP1S534_6V6.1
Predicted protein (323 aa)
           
  0.447
PP1S447_19V6.1
Predicted protein (272 aa)
           
  0.447
PP1S304_10V6.1
Predicted protein (205 aa)
           
  0.447
ppabcg6
ATP-binding cassette transporter, subfamily G, member 6, group WBC protein PpABCG6 (675 aa)
     
 
    0.432
ppabcg23
ATP-binding cassette transporter, subfamily G, member 23, group PDR protein PpABCG23 (1397 aa)
     
 
    0.432
PP1S158_40V6.1
Predicted protein (2275 aa)
           
  0.416
PP1S13_171V6.1
Predicted protein (2276 aa)
           
  0.416
GPB1
GPB1 heterotrimeric G protein beta subunit protein (379 aa)
       
 
  0.410
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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