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STRINGSTRING
PP1S144_35V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S144_35V6.1" - annotation not available in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S144_35V6.1annotation not available (1060 aa)    
Predicted Functional Partners:
PAFC1501
Paf1 complex protein (1019 aa)
     
 
  0.995
GTB1502
annotation not available (1833 aa)
     
 
  0.993
GTB1501
annotation not available (1648 aa)
     
 
  0.993
SDG1547
Uncharacterized protein (1707 aa)
     
 
  0.966
SDG1517
Uncharacterized protein (1112 aa)
     
 
  0.966
PAFB1501
Paf1 complex protein (631 aa)
     
 
  0.963
PAFD1501
Paf1 complex protein (642 aa)
     
 
  0.963
GTG1501
Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex (120 aa)
     
 
  0.962
PP1S89_20V6.1
Predicted protein (142 aa)
       
 
  0.952
PP1S197_12V6.1
Predicted protein (145 aa)
     
 
  0.951
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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