• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
PP1S14_277V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S14_277V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S14_277V6.1Predicted protein (973 aa)    
Predicted Functional Partners:
PP1S85_101V6.1
Predicted protein (272 aa)
     
 
  0.810
PP1S17_68V6.1
Predicted protein (272 aa)
     
 
  0.810
PP1S2_53V6.2
Predicted protein (626 aa)
           
  0.765
PP1S263_19V6.1
Predicted protein (641 aa)
     
 
  0.737
PP1S87_171V6.1
Predicted protein (448 aa)
     
 
  0.641
PP1S80_128V6.1
Predicted protein; Belongs to the DEAD box helicase family (470 aa)
     
 
  0.641
PAN2
PAN2-PAN3 deadenylation complex catalytic subunit PAN2; Catalytic subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein (PABP). PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome- mediated 3’-5’ exonucleolytic degradation, or deadenlyation- dependent mRNA decaping and subsequ [...] (1177 aa)
     
 
  0.612
PP1S83_219V6.2
Predicted protein (75 aa)
     
 
  0.607
PP1S33_49V6.1
annotation not available (691 aa)
           
  0.593
PP1S134_165V6.1
annotation not available (948 aa)
     
 
  0.585
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
Server load: low (12%) [HD]