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STRINGSTRING
PP1S1536_1V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S1536_1V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S1536_1V6.1Predicted protein (494 aa)    
Predicted Functional Partners:
PP1S339_3V6.1
annotation not available (92 aa)
         
  0.604
PP1S303_55V6.1
Lysine--tRNA ligase (637 aa)
         
  0.604
PP1S143_109V6.1
Lysine--tRNA ligase (635 aa)
         
  0.604
PP1S108_187V6.1
Lysine--tRNA ligase (619 aa)
         
  0.604
PP1S58_147V6.1
annotation not available (1356 aa)
           
  0.601
PP1S1_183V6.1
Uncharacterized protein; Belongs to the membrane-bound acyltransferase family (556 aa)
     
   
  0.593
PBP
annotation not available (656 aa)
         
  0.559
PP1S61_17V6.2
S-formylglutathione hydrolase; Serine hydrolase involved in the detoxification of formaldehyde (331 aa)
         
  0.559
PP1S139_6V6.1
annotation not available (118 aa)
         
  0.559
PP1S263_36V6.1
Predicted protein (415 aa)
         
  0.540
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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