STRINGSTRING
PP1S154_12V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S154_12V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S154_12V6.1Predicted protein (1133 aa)    
Predicted Functional Partners:
PP1S38_83V6.1
Annotation not available (1219 aa)
     
      0.722
PP1S22_343V6.1
Annotation not available (1227 aa)
     
      0.722
PP1S89_224V6.1
Predicted protein (773 aa)
     
      0.715
PP1S268_11V6.1
Predicted protein (684 aa)
     
      0.715
PP1S224_71V6.1
Predicted protein (377 aa)
     
      0.715
PP1S124_4V6.1
Predicted protein (703 aa)
     
      0.715
PP1S127_123V6.2
Predicted protein (583 aa)
     
 
0.675
PpDCL1a
DsRNA-specific nuclease dicer and related ribonuclease (1866 aa)
     
 
    0.665
PP1S149_37V6.1
Predicted protein (1403 aa)
     
 
    0.665
PP1S242_100V6.1
Predicted protein (921 aa)
     
 
  0.637
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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