STRINGSTRING
PP1S154_140V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S154_140V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S154_140V6.1Predicted protein (341 aa)    
Predicted Functional Partners:
PP1S210_66V6.1
UDP-N-acetylmuramate-alanine ligase (615 aa)
       
  0.729
PP1S8_124V6.1
Predicted protein (542 aa)
         
  0.642
PP1S55_252V6.1
Annotation not available (384 aa)
         
  0.642
PP1S304_21V6.1
Predicted protein (175 aa)
   
        0.513
PP1S29_221V6.2
Predicted protein (418 aa)
   
        0.513
PP1S21_311V6.1
Predicted protein (185 aa)
   
        0.513
PP1S150_109V6.1
Annotation not available (260 aa)
   
        0.513
PP1S10_183V6.1
Predicted protein (191 aa)
   
        0.513
PP1S130_275V6.1
Predicted protein (530 aa)
       
  0.448
PP1S93_33V6.1
Predicted protein (962 aa)
         
  0.424
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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