STRINGSTRING
PP1S154_3V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S154_3V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S154_3V6.1Predicted protein (589 aa)    
Predicted Functional Partners:
PP1S130_262V6.1
Predicted protein (600 aa)
       
      0.642
PP1S38_379V6.1
Predicted protein (313 aa)
       
      0.636
PP1S22_81V6.1
Predicted protein (313 aa)
       
      0.636
PP1S51_62V6.1
Predicted protein (1068 aa)
     
 
  0.627
PP1S257_34V6.1
Predicted protein (1072 aa)
     
 
  0.627
PP1S332_24V6.1
Predicted protein (1046 aa)
     
 
  0.626
PP1S136_33V6.1
Predicted protein (1222 aa)
     
 
  0.626
PP1S97_45V6.1
Annotation not available (128 aa)
     
 
  0.624
PP1S30_354V6.1
Predicted protein (179 aa)
     
 
  0.624
PP1S150_21V6.1
Annotation not available (261 aa)
     
 
  0.624
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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