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STRINGSTRING
PP1S15_365V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S15_365V6.1" - annotation not available in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S15_365V6.1annotation not available (213 aa)    
Predicted Functional Partners:
3989066
Predicted protein; Belongs to the universal ribosomal protein uL16 family (561 aa)
   
   
  0.964
GTA1501
RNA polymerase II transcription elongation factor SPT5 (1070 aa)
   
 
  0.939
PP1S144_35V6.1
annotation not available (1060 aa)
   
 
  0.939
PP1S93_68V6.1
Predicted protein (422 aa)
   
 
  0.934
PP1S79_74V6.1
Predicted protein (324 aa)
   
 
  0.934
PP1S197_12V6.1
Predicted protein (145 aa)
   
 
  0.933
PP1S111_158V6.1
Predicted protein (73 aa)
   
 
  0.929
PP1S1_420V6.1
Uncharacterized protein (541 aa)
     
 
  0.922
PP1S328_43V6.1
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (114 aa)
     
 
  0.919
PP1S30_177V6.1
Uncharacterized protein (147 aa)
     
 
  0.919
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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