STRINGSTRING
PP1S15_393V6.2 protein (Physcomitrella patens) - STRING interaction network
"PP1S15_393V6.2" - Annotation not available in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S15_393V6.2Annotation not available (732 aa)    
Predicted Functional Partners:
PP1S226_21V6.1
Predicted protein (229 aa)
     
      0.915
PP1S158_107V6.1
Predicted protein (1339 aa)
     
        0.725
PP1S101_224V6.1
Predicted protein; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly (466 aa)
     
      0.717
PP1S7_209V6.1
Predicted protein (311 aa)
     
        0.702
PP1S28_104V6.1
Annotation not available (309 aa)
     
        0.702
RS27
Predicted protein (233 aa)
     
      0.699
PP1S53_169V6.1
Predicted protein (312 aa)
     
        0.605
PP1S9_164V6.2
Annotation not available (1419 aa)
       
      0.475
PP1S92_69V6.1
Predicted protein (242 aa)
       
      0.475
PP1S92_58V6.1
Annotation not available (707 aa)
       
      0.475
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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