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SYP13A1 protein (Physcomitrella patens) - STRING interaction network
"SYP13A1" - Qa-SNARE, Sso1/Syntaxin1-type, SYP13 group in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SYP13A1Qa-SNARE, Sso1/Syntaxin1-type, SYP13 group ; Belongs to the syntaxin family (311 aa)    
Predicted Functional Partners:
SEC1A
SM/Sec1-family protein ; Belongs to the STXBP/unc-18/SEC1 family (675 aa)
     
 
  0.926
SEC1B
SM/Sec1-family protein ; Belongs to the STXBP/unc-18/SEC1 family (665 aa)
     
 
  0.926
SNAP30
Qb+Qc-SNARE, SNAP33-family (271 aa)
     
 
  0.919
SNAP29
Qb+Qc-SNARE, SNAP33-family (269 aa)
     
 
  0.919
PP1S138_10V6.1
annotation not available (263 aa)
     
 
  0.916
PP1S21_109V6.1
annotation not available (1101 aa)
       
 
  0.898
PP1S147_28V6.1
annotation not available (206 aa)
       
 
  0.898
TYN12
annotation not available (786 aa)
       
 
  0.898
SYP4A2
Qa-SNARE, SYP4/Tlg2p/Syntaxin 16-type ; Belongs to the syntaxin family (322 aa)
     
 
  0.819
SYP4A1
Qa-SNARE, SYP4/Tlg2p/Syntaxin 16-type ; Belongs to the syntaxin family (322 aa)
     
 
  0.819
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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