STRINGSTRING
PP1S162_142V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S162_142V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S162_142V6.1Predicted protein (270 aa)    
Predicted Functional Partners:
PP1S8_124V6.1
Predicted protein (542 aa)
         
  0.765
PP1S55_252V6.1
Annotation not available (384 aa)
         
  0.765
PP1S14_106V6.1
Annotation not available (681 aa)
     
 
  0.754
PP1S70_295V6.1
Predicted protein (396 aa)
   
   
  0.664
PP1S190_51V6.1
Annotation not available (293 aa)
   
   
  0.664
PP1S12_246V6.1
Predicted protein (381 aa)
   
   
  0.664
PP1S101_224V6.1
Predicted protein; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly (466 aa)
       
      0.642
PP1S98_5V6.1
Predicted protein (526 aa)
   
 
 
  0.641
PP1S300_44V6.1
Predicted protein (64 aa)
       
      0.640
PP1S28_327V6.1
Inosine-5’-monophosphate dehydrogenase (416 aa)
              0.600
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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