STRINGSTRING
PP1S162_4V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S162_4V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S162_4V6.1Predicted protein (414 aa)    
Predicted Functional Partners:
PP1S404_36V6.1
Annotation not available (222 aa)
       
    0.606
PP1S135_65V6.1
Predicted protein (2897 aa)
         
  0.588
PP1S88_41V6.1
Annotation not available (634 aa)
           
  0.469
PP1S28_164V6.1
Annotation not available (590 aa)
           
  0.465
PP1S3_241V6.1
Predicted protein (403 aa)
       
    0.400
PP1S353_39V6.1
Annotation not available (403 aa)
       
    0.400
BRD1501
Single bromodomain-containing protein (808 aa)
       
    0.400
PP1S234_105V6.1
Annotation not available (95 aa)
       
    0.400
BRD1502
Single bromodomain-containing protein (572 aa)
       
    0.400
PP1S143_150V6.1
Annotation not available (716 aa)
       
    0.400
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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