STRINGSTRING
PP1S163_33V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S163_33V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S163_33V6.1Predicted protein (535 aa)    
Predicted Functional Partners:
PP1S98_233V6.1
Predicted protein (310 aa)
     
  0.748
PP1S90_53V6.1
Predicted protein (244 aa)
     
  0.748
PP1S65_120V6.1
Predicted protein (148 aa)
     
  0.748
PP1S47_183V6.1
Predicted protein (487 aa)
     
  0.748
PP1S381_46V6.1
Predicted protein (149 aa)
     
  0.748
PP1S36_1V6.1
Predicted protein (179 aa)
     
  0.748
PP1S341_24V6.1
Predicted protein (166 aa)
     
  0.748
PETF
Ferredoxin, chloroplastic; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions (145 aa)
     
  0.748
PP1S145_77V6.1
Predicted protein (160 aa)
     
  0.748
PP1S143_177V6.1
Predicted protein (145 aa)
     
  0.748
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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