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PPM4 protein (Physcomitrella patens) - STRING interaction network
"PPM4" - MIKC MADS-domain protein PPM4 in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PPM4MIKC MADS-domain protein PPM4 (425 aa)    
Predicted Functional Partners:
PP1S160_78V6.1
Annotation not available (2263 aa)
       
  0.895
PP1S99_26V6.1
Predicted protein (648 aa)
     
  0.799
PP1S88_14V6.1
Predicted protein (159 aa)
     
  0.799
PP1S87_157V6.1
Predicted protein (533 aa)
     
  0.799
PP1S80_71V6.1
Predicted protein (532 aa)
     
  0.799
PP1S59_325V6.1
Predicted protein (380 aa)
     
  0.799
PP1S39_131V6.1
Predicted protein (133 aa)
     
  0.799
PP1S36_192V6.3
Annotation not available (587 aa)
     
  0.799
PP1S29_285V6.1
Predicted protein (683 aa)
     
  0.799
PP1S257_85V6.2
Annotation not available (565 aa)
     
  0.799
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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