STRINGSTRING
SGS1501 protein (Physcomitrella patens) - STRING interaction network
"SGS1501" - Suppressor of silencing in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SGS1501Suppressor of silencing (725 aa)    
Predicted Functional Partners:
RDR1502
Putative RNA-dependent RNA polymerase 6 (1152 aa)
     
 
  0.934
RDR1501
RNA-directed RNA polymerase (1151 aa)
     
 
  0.828
PP1S386_30V6.1
Annotation not available (1017 aa)
     
 
  0.774
RDR1503
RNA-directed RNA polymerase (1046 aa)
     
 
  0.774
PP1S149_37V6.1
Predicted protein (1403 aa)
           
  0.585
PpAGO1b
Argonaute family member (1173 aa)
           
  0.571
PpAGO1a
Argonaute family member (1197 aa)
           
  0.571
PpAGO1c
Argonaute family member (1147 aa)
           
  0.571
PP1S82_160V6.1
Annotation not available (1602 aa)
           
  0.570
PpDCL1a
DsRNA-specific nuclease dicer and related ribonuclease (1866 aa)
           
  0.570
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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