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rpoA protein (Physcomitrella patens) - STRING interaction network
"rpoA" - DNA-directed RNA polymerase subunit alpha, chloroplastic in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpoADNA-directed RNA polymerase subunit alpha, chloroplastic; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (450 aa)    
Predicted Functional Partners:
3989066
Predicted protein; Belongs to the universal ribosomal protein uL16 family (561 aa)
   
 
  0.999
rpoC2
DNA-directed RNA polymerase subunit beta’’; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; Belongs to the RNA polymerase beta’ chain family. RpoC2 subfamily (208 aa)
 
 
  0.996
rpoC1
DNA-directed RNA polymerase subunit beta’; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; Belongs to the RNA polymerase beta’ chain family. RpoC1 subfamily (221 aa)
 
 
  0.995
PP1S316_6V6.1
Predicted protein; Belongs to the universal ribosomal protein uS11 family (151 aa)
   
 
  0.991
PP1S271_98V6.1
Predicted protein; Belongs to the universal ribosomal protein uS11 family (151 aa)
   
 
  0.991
PP1S66_116V6.1
annotation not available (266 aa)
     
 
  0.990
PP1S221_55V6.1
annotation not available (467 aa)
     
 
  0.989
PP1S47_241V6.1
Predicted protein (108 aa)
     
 
  0.988
PP1S36_299V6.1
Predicted protein (271 aa)
     
 
  0.988
petB
Cytochrome b6; Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions (162 aa)
   
   
  0.979
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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