STRINGSTRING
PP1S171_139V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S171_139V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S171_139V6.1Predicted protein (553 aa)    
Predicted Functional Partners:
PP1S53_36V6.1
Predicted protein (526 aa)
   
          0.468
PP1S197_130V6.1
Predicted protein (540 aa)
   
          0.458
PP1S32_85V6.1
Predicted protein (554 aa)
   
          0.449
PP1S426_5V6.1
Predicted protein (613 aa)
   
          0.447
PP1S302_62V6.1
Predicted protein (551 aa)
   
          0.441
PP1S93_52V6.1
Phosphatidate cytidylyltransferase (489 aa)
           
  0.424
PP1S113_85V6.1
Phosphatidate cytidylyltransferase (489 aa)
           
  0.424
PP1S106_169V6.1
Phosphatidate cytidylyltransferase (559 aa)
           
  0.424
PP1S76_116V6.1
Predicted protein (498 aa)
   
          0.417
PP1S83_211V6.3
Predicted protein (525 aa)
           
  0.407
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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