STRINGSTRING
VTI1A2 protein (Physcomitrella patens) - STRING interaction network
"VTI1A2" - Qb-SNARE, VTI1-family in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VTI1A2Qb-SNARE, VTI1-family (221 aa)    
Predicted Functional Partners:
SYP5A2
Qc-SNARE, SYP5 family (225 aa)
     
  0.996
PP1S232_54V6.1
Predicted protein (225 aa)
     
  0.996
SYP2A1
Qa-SNARE, SYP2/Pep12p/Syntaxin 7-type (262 aa)
     
  0.995
PP1S72_269V6.1
Predicted protein (87 aa)
     
  0.995
SYP2B1
Qa-SNARE, SYP2/Pep12p/Syntaxin 7-type (268 aa)
     
  0.995
SYP2A2
Qa-SNARE, SYP2/Pep12p/Syntaxin 7-type (262 aa)
     
  0.995
YKT6A2
R-SNARE, YKT6-family (156 aa)
     
  0.994
YKT6A1
R-SNARE, YKT6-family (200 aa)
     
  0.994
SYP4A2
Qa-SNARE, SYP4/Tlg2p/Syntaxin 16-type (322 aa)
     
  0.982
SYP4A1
Qa-SNARE, SYP4/Tlg2p/Syntaxin 16-type (322 aa)
     
  0.982
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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