STRINGSTRING
PP1S173_64V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S173_64V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S173_64V6.1Predicted protein; Specifically methylates the N1 position of guanosine-37 in various cytoplasmic and mitochondrial tRNAs. Methylation is not dependent on the nature of the nucleoside 5’ of the target nucleoside. This is the first step in the biosynthesis of wybutosine (yW), a modified base adjacent to the anticodon of tRNAs and required for accurate decoding (485 aa)    
Predicted Functional Partners:
PP1S58_120V6.1
Predicted protein (122 aa)
     
 
  0.731
PP1S302_56V6.1
Annotation not available (1177 aa)
   
   
  0.633
PP1S83_180V6.1
Annotation not available (842 aa)
   
   
  0.585
PP1S184_72V6.1
Predicted protein (828 aa)
     
   
  0.574
PP1S17_13V6.1
Predicted protein (339 aa)
     
   
  0.561
PP1S15_233V6.1
Predicted protein (715 aa)
     
   
  0.558
PP1S68_292V6.1
Annotation not available (441 aa)
   
   
  0.557
PP1S168_95V6.1
Predicted protein; Methylates the 2’-O-ribose of nucleotides at positions 32 and 34 of the tRNA anticodon loop of substrate tRNAs (295 aa)
     
   
  0.556
PP1S20_121V6.1
Annotation not available (436 aa)
   
        0.545
PP1S100_108V6.1
Predicted protein (520 aa)
   
        0.545
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
Server load: low (15%) [HD]