STRINGSTRING
PP1S17_380V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S17_380V6.1" - Predicted protein in Physcomitrella patens
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S17_380V6.1Predicted protein (309 aa)    
Predicted Functional Partners:
PP1S75_233V6.1
Predicted protein (223 aa)
   
          0.507
PP1S105_190V6.1
Predicted protein (409 aa)
   
        0.480
PP1S29_102V6.1
Annotation not available (314 aa)
   
          0.475
PP1S238_57V6.1
Predicted protein (411 aa)
   
        0.472
PP1S304_43V6.1
Predicted protein (538 aa)
   
          0.469
PP1S347_28V6.1
Predicted protein (480 aa)
   
          0.443
PP1S237_11V6.1
Queuine tRNA-ribosyltransferase; Exchanges the guanine residue with 7-aminomethyl-7- deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). After this exchange, a cyclopentendiol moiety is attached to the 7-aminomethyl group of 7-deazaguanine, resulting in the hypermodified nucleoside queuosine (Q) (7-(((4,5-cis- dihydroxy-2-cyclopenten-1-yl)amino)methyl)-7-deazaguanosine) (402 aa)
   
        0.441
PP1S321_8V6.1
Predicted protein (365 aa)
   
          0.438
PP1S126_64V6.1
Predicted protein (517 aa)
   
        0.426
PP1S83_241V6.1
Predicted protein (253 aa)
   
          0.425
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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