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STRINGSTRING
SDG1517 protein (Physcomitrella patens) - STRING interaction network
"SDG1517" - Uncharacterized protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG1517Uncharacterized protein (1112 aa)    
Predicted Functional Partners:
PP1S54_136V6.1
annotation not available (1001 aa)
     
 
  0.973
GTA1501
RNA polymerase II transcription elongation factor SPT5 (1070 aa)
     
 
  0.966
PP1S144_35V6.1
annotation not available (1060 aa)
     
 
  0.966
PP1S97_14V6.1
Uncharacterized protein (480 aa)
     
 
  0.954
PAFB1501
Paf1 complex protein (631 aa)
     
 
  0.950
GTG1501
Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex (120 aa)
       
 
  0.944
PP1S104_102V6.1
annotation not available (1813 aa)
     
   
  0.934
PP1S93_68V6.1
Predicted protein (422 aa)
       
 
  0.928
PP1S79_74V6.1
Predicted protein (324 aa)
       
 
  0.928
PP1S80_87V6.1
annotation not available (1915 aa)
     
   
  0.914
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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