STRINGSTRING
PP1S189_109V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S189_109V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S189_109V6.1Predicted protein (216 aa)    
Predicted Functional Partners:
PP1S22_40V6.1
Predicted protein (757 aa)
         
  0.888
PP1S260_4V6.1
Predicted protein (428 aa)
   
    0.717
PP1S114_138V6.1
Predicted protein (418 aa)
   
    0.717
PP1S68_87V6.1
Predicted protein (818 aa)
       
    0.667
PP1S43_210V6.1
Predicted protein (119 aa)
     
      0.666
PP1S65_268V6.1
Predicted protein (130 aa)
       
      0.644
PP1S48_150V6.1
Annotation not available (63 aa)
       
      0.644
PP1S84_51V6.1
Predicted protein (446 aa)
   
    0.642
PP1S78_20V6.1
Predicted protein (674 aa)
   
    0.642
PP1S6_131V6.1
Predicted protein (413 aa)
   
    0.642
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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