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STRINGSTRING
PP1S189_19V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S189_19V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S189_19V6.1Predicted protein (304 aa)    
Predicted Functional Partners:
PP1S540_6V6.1
annotation not available (211 aa)
     
   
  0.888
PP1S281_9V6.2
Predicted protein (330 aa)
     
   
  0.888
PP1S9_141V6.1
annotation not available (1040 aa)
     
        0.885
PP1S98_233V6.1
Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions (310 aa)
     
        0.885
PP1S98_142V6.1
Predicted protein (386 aa)
     
        0.885
PP1S95_45V6.1
Predicted protein (219 aa)
     
        0.885
PP1S94_105V6.1
Predicted protein (187 aa)
     
        0.885
PP1S90_50V6.1
Predicted protein (452 aa)
     
        0.885
PP1S84_273V6.1
Predicted protein (703 aa)
     
        0.885
PP1S7_222V6.2
Probable alanine--tRNA ligase, chloroplastic; Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction- alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain; Belongs to the class-II aminoacyl-tRNA synthetase family (1024 aa)
     
        0.885
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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