STRINGSTRING
PP1S18_130V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S18_130V6.1" - Amino acid transporter in Physcomitrella patens
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S18_130V6.1Amino acid transporter (483 aa)    
Predicted Functional Partners:
PP1S274_69V6.1
Urease (837 aa)
         
  0.711
PP1S46_63V6.1
Predicted protein (610 aa)
   
   
  0.581
PP1S35_384V6.1
Predicted protein (610 aa)
   
   
  0.581
PP1S79_76V6.1
Predicted protein; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria (892 aa)
   
 
  0.522
Nia1
Predicted protein; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria (891 aa)
   
 
  0.522
PP1S58_249V6.1
Predicted protein; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria (891 aa)
   
 
  0.522
PP1S28_168V6.2
Chorismate synthase (466 aa)
              0.512
PP1S3133_1V6.1
Predicted protein (342 aa)
   
   
  0.504
PP1S54_48V6.2
Predicted protein (522 aa)
         
  0.472
PP1S33_203V6.1
DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1397 aa)
         
  0.468
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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