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  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
PP1S196_117V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S196_117V6.1" - annotation not available in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S196_117V6.1annotation not available (514 aa)    
Predicted Functional Partners:
PP1S48_117V6.1
Predicted protein (783 aa)
     
        0.885
PP1S145_89V6.1
Predicted protein (783 aa)
     
        0.885
PP1S2_40V6.1
Predicted protein; Belongs to the protein kinase superfamily (613 aa)
     
        0.878
PP1S209_82V6.1
Predicted protein (612 aa)
     
        0.878
PP1S173_42V6.1
Uncharacterized protein; Belongs to the protein kinase superfamily (613 aa)
     
        0.878
PP1S65_222V6.1
Predicted protein (179 aa)
           
  0.640
PP1S137_94V6.1
Predicted protein (205 aa)
           
  0.640
NBP35
Cytosolic Fe-S cluster assembly factor NBP35; Component of the cytosolic iron-sulfur (Fe-S) protein assembly (CIA) machinery. Required for maturation of extramitochondrial Fe-S proteins. Functions as Fe-S scaffold, mediating the de novo assembly of an Fe-S cluster and its transfer to target apoproteins. Essential for embryo development (360 aa)
           
  0.596
PP1S55_144V6.1
Predicted protein (562 aa)
     
   
  0.588
PP1S256_42V6.1
annotation not available (486 aa)
     
   
  0.588
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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