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STRINGSTRING
PP1S196_28V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S196_28V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S196_28V6.1Predicted protein (784 aa)    
Predicted Functional Partners:
PP1S312_21V6.1
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (251 aa)
   
   
  0.938
PP1S251_39V6.2
Mevalonate kinase (445 aa)
           
  0.920
PP1S176_111V6.1
annotation not available (388 aa)
           
  0.909
PP1S149_51V6.2
Predicted protein (426 aa)
   
   
  0.907
PP1S237_5V6.1
annotation not available (1076 aa)
     
   
  0.899
PP1S21_327V6.2
annotation not available (1072 aa)
     
   
  0.899
PP1S67_44V6.1
annotation not available (243 aa)
           
  0.899
PP1S8_131V6.2
Predicted protein; Belongs to the FPP/GGPP synthase family (416 aa)
   
   
  0.888
PP1S55_266V6.1
Predicted protein; Belongs to the FPP/GGPP synthase family (347 aa)
   
   
  0.888
PP1S73_243V6.2
Predicted protein (485 aa)
   
   
  0.785
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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