STRINGSTRING
PP1S196_67V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S196_67V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S196_67V6.1Predicted protein (473 aa)    
Predicted Functional Partners:
PP1S89_259V6.1
Annotation not available (742 aa)
     
  0.975
PpAGO1b
Argonaute family member (1173 aa)
     
  0.975
AGO1505
Argonaute family member (948 aa)
     
  0.975
PpAGO1a
Argonaute family member (1197 aa)
     
  0.975
SDG1508
Piwi domain-containing protein (249 aa)
     
  0.975
AGO1506
Argonaute family member (961 aa)
     
  0.975
PpAGO1c
Argonaute family member (1147 aa)
     
  0.975
AGO1507
Argonaute family member (1032 aa)
     
  0.975
AGO1504
Argonaute family member (923 aa)
     
  0.975
PP1S44_176V6.1
Annotation not available (224 aa)
   
 
  0.871
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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