STRINGSTRING
PP1S198_147V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S198_147V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S198_147V6.1Predicted protein (398 aa)    
Predicted Functional Partners:
PP1S427_10V6.1
Predicted protein (717 aa)
     
 
  0.921
PP1S18_273V6.1
Predicted protein (715 aa)
     
 
  0.921
PP1S18_265V6.1
Predicted protein (715 aa)
     
 
  0.921
PP1S53_101V6.1
annotation not available (1064 aa)
     
 
  0.887
PP1S41_237V6.1
annotation not available (664 aa)
     
 
  0.862
PP1S101_224V6.1
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly (466 aa)
     
 
  0.838
PP1S52_171V6.1
annotation not available (965 aa)
     
      0.827
PP1S47_223V6.1
Predicted protein (691 aa)
     
      0.827
PP1S206_26V6.1
Predicted protein (261 aa)
     
      0.822
PP1S52_170V6.1
Predicted protein (182 aa)
       
      0.820
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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